Disease problem

Crown Gall: Rough, Warty Growths on Stems and Roots That Aren't Normal

Hard, warty, tumor-like growths at the soil line, stem base, or roots caused by Agrobacterium bacteria — not callus, edema, or aerial roots.

Crown gall is one of the most fascinating — and troubling — diseases a houseplant can develop. It's caused by a soil-borne bacterium called Agrobacterium tumefaciens, which essentially hijacks your plant's own genetics: the bacterium injects a fragment of its DNA (called T-DNA) directly into the plant's chromosomes, reprogramming cells to produce hormones that trigger runaway tumor growth. The result is rough, corky, wart-like lumps that appear at the soil line, on roots, or at stem wounds — and because the cause is baked into the plant's own DNA, there is no cure once infection takes hold.

Crown gall is far more common on outdoor woody plants — roses, fruit trees, and shrubs — than on typical houseplants, but it can arrive in your home on a newly purchased cutting or bareroot plant. Because the early growths can look a lot like normal wound callus, edema bumps, or even the corky scabs that sometimes form on succulents, accurate identification matters before you take any action. This page walks you through exactly what crown gall looks like, what it isn't, and how to respond if you genuinely suspect your plant has it.

Signs to look for

  • Rounded, wart-like or cauliflower-textured swellings appearing at or just below the soil line, at the root crown, or at stem wound sites.
  • Young galls are smooth, white or cream-colored, and slightly spongy; older galls harden and turn brown or tan, developing a rough, cracked, woody surface.
  • Galls are solid all the way through — not hollow — and when cut open, the interior lacks normal annual growth rings and is softer than healthy surrounding wood.
  • Growths do not produce leaves, buds, or stems (distinguishing crown gall from fasciation or leafy gall caused by Rhodococcus fascians).
  • Multiple galls may appear over time, including secondary growths away from the original infection site — especially after the plant is repotted or pruned and new wounds are created.
  • Mildly stunted growth, increased vulnerability to drought stress, or wilting in warm weather — especially if a large gall partially girdles the root crown and restricts water uptake.

What causes it

Agrobacterium tumefaciens infection through wounds

The bacterium lives in soil and enters the plant exclusively through wound sites — cuts, pruning wounds, damaged roots, or abrasions from repotting. Once inside, it injects T-DNA from its tumor-inducing (Ti) plasmid into the plant's chromosomes, triggering hormone overproduction and uncontrolled cell division. Signs of gall formation can appear as early as 8–12 days after infection, developing into small but visible galls within 2–3 weeks under warm, humid conditions.

Contaminated soil, tools, or infected nursery stock

Agrobacterium tumefaciens persists in soil for long periods, even without a host plant. Bringing home a plant already carrying the bacterium in its root zone — or reusing soil or unsterilized tools from an infected plant — introduces the pathogen to your collection. Cuttings taken from infected stock plants may look completely healthy but can develop galls at their cut ends after rooting.

Root or stem damage during repotting or handling

The bacterium cannot infect intact plant tissue — it needs an entry wound. Aggressive root-pruning, broken stems, and scrapes against a pot edge during repotting all create the access points Agrobacterium needs. This is why crown gall sometimes appears a few weeks after repotting a plant that was growing in contaminated soil, even if the plant looked fine before.

Warm, moist conditions that favor bacterial activity

Like most soil-borne bacteria, Agrobacterium is most active in warm, moist environments. Very wet, poorly draining soil not only stresses plant roots (creating more wound opportunities) but also keeps the bacterium in an active, mobile state where it can reach and colonize fresh wounds more easily.

How to fix it

  1. 1
    Confirm the diagnosis before acting

    Look carefully at the growth in question. A true crown gall is solid, has no internal growth rings when cut, and does not produce any leaf or bud tissue. It appears at wound sites or the root crown — not randomly on flat stem surfaces. Confused by what you're seeing? Compare against edema (small, corky blisters on leaf undersides or stems caused by overwatering), oedema bumps, corky scab on succulents, aerial root nubs on climbing plants like pothos and monstera, and normal wound callus before concluding it's crown gall. If in doubt, consult a cooperative extension plant diagnostic clinic — molecular methods can confirm Agrobacterium identity definitively.

  2. 2
    Isolate the plant immediately

    Move the suspected plant away from the rest of your collection. Although Agrobacterium spreads mainly through soil contact and shared tools rather than through the air, isolating the plant prevents you from accidentally moving contaminated soil to healthy pots during watering or maintenance.

  3. 3
    Assess whether the plant is worth keeping

    There is no chemical treatment and no cure for crown gall once a plant is infected. For lightly affected plants with a single small gall and otherwise healthy growth, some gardeners choose to keep the plant and manage it carefully. For plants with large galls that encircle the root crown or multiple spreading tumors, removal and disposal (in the trash, not compost) is the most responsible decision to protect the rest of your collection.

  4. 4
    Do not attempt to cut away the gall

    Cutting into a gall releases Agrobacterium cells into the wound and surrounding soil, and the cutting tool becomes a vector. If you handle the affected plant, wash your hands thoroughly afterward and disinfect any tools that came into contact with the galls or surrounding soil with 70% isopropyl alcohol or a 10% bleach solution before using them on other plants.

  5. 5
    Dispose of the soil safely

    Discard all soil from the infected plant's pot. Do not reuse it or add it to outdoor beds. Agrobacterium can persist in soil without a host, so the safest route is to bag the soil and put it in household trash. Wash the pot thoroughly with soap and water, then disinfect it with a dilute bleach solution before reusing it.

  6. 6
    Monitor neighboring plants

    If the infected plant shared a drip tray, was watered with the same can without rinsing, or had roots that touched neighboring pots, inspect those plants at the soil line and root crown over the coming weeks. Early galls — smooth, cream-colored swellings — are easy to miss at first glance.

How to prevent it

  • Buy plants from reputable nurseries and inspect the root crown and stem base carefully before purchasing — look for any swellings or rough, corky growths at or below the soil line.
  • Sterilize pruning tools and repotting equipment between plants using 70% isopropyl alcohol; wounds are the sole entry point for Agrobacterium, and clean tools mean clean cuts.
  • Avoid unnecessary wounding during repotting — handle roots gently, and if roots are broken or cut, give the plant a few days to dry the wound before placing it in fresh soil.
  • Never reuse potting soil from an unknown or suspect source; fresh, sterile potting mix for each repot is your single best line of defense against soil-borne pathogens.
  • For woody cuttings or new bareroot plants where crown gall is a concern (especially roses or figs), a biological control product containing beneficial bacteria — such as those in the NoGall formulation — can be used as a preventive dip before planting; these beneficial bacteria preemptively colonize wound sites and produce an antibiotic that inhibits Agrobacterium tumefaciens.

FAQ

How do I tell crown gall apart from normal wound callus?

Normal wound callus is flat, smooth, and forms neatly over a cut or scrape — it stays relatively small and blends in with the surrounding tissue. A crown gall starts smooth and cream-colored but keeps growing, eventually developing a rough, bumpy, cauliflower-like surface and becoming noticeably larger than any callus would be. If you slice into the growth, callus will have a texture consistent with the surrounding wood; a crown gall is softer than normal wood and lacks the typical growth-ring pattern you'd see in healthy stem tissue. Location matters too: callus forms right at a wound edge, while galls often appear at the root crown or stem base and can grow large enough to encircle the stem.

Could that bumpy growth at my plant's soil line be something other than crown gall?

Almost certainly, yes — especially on typical houseplants. The most common lookalikes are: edema or oedema bumps (small, corky blisters caused by overwatering, found on stems and leaf undersides — see the oedema-corky-bumps-stems page), aerial root nubs on climbing aroids like monstera and pothos, normal wound callus at a pruning cut, corky scab on succulents (a physiological response to humidity fluctuations), and in outdoor or garden settings, nitrogen-fixing root nodules on plants in the pea family. Crown gall is genuinely rare on common houseplants; it's far more prevalent on roses, fruit trees, and woody shrubs.

My plant has a crown gall but otherwise looks healthy. Do I have to throw it away?

Not necessarily right away — but understand the limits. There is no treatment that will eliminate the infection, since the bacterial DNA is integrated into the plant's own cells. A plant with a single small gall and otherwise vigorous growth can be kept, but it should be isolated from the rest of your collection, handled with clean tools, and never used as a source of cuttings (cuttings from infected stock can develop galls at their cut ends, even if they look healthy when taken). Monitor the gall over time: if it grows quickly or new galls appear, disposal is the wiser choice. Few plants are actually killed by crown gall alone, but heavily galled plants are more vulnerable to drought stress and other secondary problems.

Can crown gall spread from one houseplant to another?

Yes, but not through the air — Agrobacterium spreads through contaminated soil, shared water that has run through infected root zones, and unsterilized tools. It cannot infect intact plant surfaces; it needs a wound to enter. So the practical risks in a home setting are: reusing soil from an infected plant, using the same trowel or pruners without disinfecting, or letting infected soil splash into neighboring pots during watering. Keeping infected plants isolated and practicing clean tool hygiene breaks the transmission chain effectively.

Is crown gall the same thing as fasciation, where stems grow flat and strappy?

No — they're caused by different organisms and look very different. Fasciation (flattened, ribbon-like, or crested stem growth) is usually caused by Rhodococcus fascians bacteria or by physical/hormonal disruption, and it produces recognizable plant parts like distorted leaves and buds. Crown gall produces solid, featureless tumors that never differentiate into leaves, stems, or buds. If the unusual growth on your plant has any leafy or bud-like tissue within it, fasciation is a much more likely explanation than crown gall.